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Type: Bug
Resolution: Fixed
Priority: Minor
Fix Version/s: 2.2.2
Affects Version/s: 2.2.1
Component/s: API
Labels:
None

Description

##################################
Initting DB with command: cmd /c c:\temp\offline\grouper.apiBinary-2.2.1\bin\gsh.bat -registry -drop -runscript -noprompt

.
stderr: Grouper database schema DDL requires updates
(should run script manually and carefully, in sections, verify data before drop statements, backup/export important data before starting, follow change log on confluence, dont run exact same script in multiple envs - generate a new one for each env),
script file is:
C:\temp\offline\grouper.apiBinary-2.2.1\ddlScripts\grouperDdl_20150916_14_22_54_450.sql
Grouper warning: jarfile mismatch, expecting name: 'subject.jar' size: 260483 manifest version: 2.2.1. However the jar detected is: C:\temp\offline\grouper.apiBinary-2.2.1\lib\grouper\subject.jar, name: subject.jar size: 259419 manifest version: 2.2.1
Grouper note: auto-created attributeDefName: etc:attribute:attrExternalSubjectInvite:externalSubjectInvite
Grouper note: auto-created attributeDefName: etc:attribute:attrExternalSubjectInvite:externalSubjectInviteExpireDate
Grouper note: auto-created attributeDefName: etc:attribute:attrExternalSubjectInvite:externalSubjectInviteDate
Grouper note: auto-created attributeDefName: etc:attribute:attrExternalSubjectInvite:externalSubjectEmailAddress
Grouper note: auto-created attributeDefName: etc:attribute:attrExternalSubjectInvite:externalSubjectInviteGroupUuids
Grouper note: auto-created attributeDefName: etc:attribute:attrExternalSubjectInvite:externalSubjectInviteMemberId
Grouper note: auto-created attributeDefName: etc:attribute:attrExternalSubjectInvite:externalSubjectInviteUuid
Grouper note: auto-created attributeDefName: etc:attribute:attrExternalSubjectInvite:externalSubjectInviteEmailWhenRegistered
Grouper note: auto-created attributeDefName: etc:attribute:attrExternalSubjectInvite:externalSubjectInviteEmail
Grouper note: auto-created attributeDefName: etc:attribute:rules:rule
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleActAsSubjectId
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleActAsSubjectIdentifier
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleActAsSubjectSourceId
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleCheckType
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleCheckOwnerId
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleCheckOwnerName
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleCheckStemScope
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleCheckArg0
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleCheckArg1
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleIfOwnerId
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleIfOwnerName
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleIfConditionEl
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleIfConditionEnum
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleIfConditionEnumArg0
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleIfConditionEnumArg1
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleIfStemScope
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleThenEl
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleThenEnum
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleThenEnumArg0
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleThenEnumArg1
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleThenEnumArg2
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleValid
Grouper note: auto-created attributeDefName: etc:attribute:rules:ruleRunDaemon
Grouper note: auto-created attributeDefName: etc:attribute:permissionLimits:limitExpression
Grouper note: auto-created attributeDefName: etc:attribute:permissionLimits:limitIpOnNetworks
Grouper note: auto-created attributeDefName: etc:attribute:permissionLimits:limitIpOnNetworkRealm
Grouper note: auto-created attributeDefName: etc:attribute:permissionLimits:limitLabelsContain
Grouper note: auto-created attributeDefName: etc:attribute:permissionLimits:limitAmountLessThan
Grouper note: auto-created attributeDefName: etc:attribute:permissionLimits:limitAmountLessThanOrEqual
Grouper note: auto-created attributeDefName: etc:attribute:permissionLimits:limitWeekday9to5
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoader
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoaderType
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoaderDbName
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoaderScheduleType
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoaderQuartzCron
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoaderIntervalSeconds
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoaderPriority
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoaderAttrsLike
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoaderAttrQuery
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoaderAttrSetQuery
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoaderActionQuery
Grouper note: auto-created attributeDefName: etc:attribute:attrLoader:attributeLoaderActionSetQuery
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdap
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapType
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapServerId
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapFilter
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapQuartzCron
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapSearchDn
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapSubjectAttribute
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapSourceId
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapSubjectIdType
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapAndGroups
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapSearchScope
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapPriority
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapGroupsLike
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapGroupAttribute
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapAttributeFilterExpression
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapExtraAttributes
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapErrorUnresolvable
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapGroupNameExpression
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapGroupDisplayNameExpression
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapGroupDescriptionExpression
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapSubjectExpression
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapGroupTypes
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapReaders
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapViewers
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapAdmins
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapUpdaters
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapOptins
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapOptouts
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapGroupAttrReaders
Grouper note: auto-created attributeDefName: etc:attribute:loaderLdap:grouperLoaderLdapGroupAttrUpdaters
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserData
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserDataFavoriteGroups
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserDataFavoriteSubjects
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserDataRecentGroups
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserDataFavoriteStems
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserDataRecentStems
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserDataRecentAttributeDefs
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserDataRecentAttributeDefNames
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserDataRecentSubjects
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserDataFavoriteAttributeDefs
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserDataFavoriteAttributeDefNames
Grouper note: auto-created attributeDefName: etc:attribute:userData:grouperUserDataPreferences
Grouper note: auto-created attributeDefName: etc:attribute:entities:entitySubjectIdentifier
Couldnt startup grouper: Problem adding loader type/attributes
java.lang.RuntimeException: Problem adding loader type/attributes
at edu.internet2.middleware.grouper.misc.GrouperStartup.initLoaderType(GrouperStartup.java:591)
at edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.java:275)
at edu.internet2.middleware.grouper.registry.RegistryInitializeSchema.main(RegistryInitializeSchema.java:188)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at edu.internet2.middleware.grouper.app.gsh.GrouperShell.handleSpecialCase(GrouperShell.java:204)
at edu.internet2.middleware.grouper.app.gsh.GrouperShell.main(GrouperShell.java:144)
at edu.internet2.middleware.grouper.app.gsh.GrouperShellWrapper.main(GrouperShellWrapper.java:31)
Caused by: java.lang.RuntimeException: Cannot create attribute def: , stem name: etc:legacy:attribute, attrDef extension: legacyGroupTypeDef_grouperLoader, uuid: null, , Problem in HibernateSession: HibernateSession (6dd603f5): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Exception in save: edu.internet2.middleware.grouper.Membership, ByObjectStatic, query: ', cacheable: null, cacheRegion: null, entityName: ImmediateMembershipEntry, tx type: null,
Problem in HibernateSession: HibernateSession (cb321c1): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Problem in HibernateSession: HibernateSession (3d980821): new, notReadonly, READ_WRITE_NEW, notActiveTransaction, session (f7a2eab)
at edu.internet2.middleware.grouper.misc.GrouperStartup$3.callback(GrouperStartup.java:578)
at edu.internet2.middleware.grouper.GrouperSession.callbackGrouperSession(GrouperSession.java:974)
at edu.internet2.middleware.grouper.misc.GrouperStartup.initLoaderType(GrouperStartup.java:556)
... 9 more
Caused by: edu.internet2.middleware.grouper.exception.AttributeDefAddException: Cannot create attribute def: , stem name: etc:legacy:attribute, attrDef extension: legacyGroupTypeDef_grouperLoader, uuid: null, , Problem in HibernateSession: HibernateSession (6dd603f5): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Exception in save: edu.internet2.middleware.grouper.Membership, ByObjectStatic, query: ', cacheable: null, cacheRegion: null, entityName: ImmediateMembershipEntry, tx type: null,
Problem in HibernateSession: HibernateSession (cb321c1): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Problem in HibernateSession: HibernateSession (3d980821): new, notReadonly, READ_WRITE_NEW, notActiveTransaction, session (f7a2eab)
at edu.internet2.middleware.grouper.Stem$7.callback(Stem.java:2540)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:687)
at edu.internet2.middleware.grouper.Stem.internal_addChildAttributeDef(Stem.java:2476)
at edu.internet2.middleware.grouper.Stem.addChildAttributeDef(Stem.java:544)
at edu.internet2.middleware.grouper.GroupType$5.callback(GroupType.java:856)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:687)
at edu.internet2.middleware.grouper.GroupType.internal_createType(GroupType.java:819)
at edu.internet2.middleware.grouper.GroupType.createTypeHelper(GroupType.java:233)
at edu.internet2.middleware.grouper.GroupType.createType(GroupType.java:181)
at edu.internet2.middleware.grouper.misc.GrouperStartup$3.callback(GrouperStartup.java:562)
... 11 more
Caused by: edu.internet2.middleware.grouper.internal.dao.GrouperDAOException: Problem in HibernateSession: HibernateSession (6dd603f5): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Exception in save: edu.internet2.middleware.grouper.Membership, ByObjectStatic, query: ', cacheable: null, cacheRegion: null, entityName: ImmediateMembershipEntry, tx type: null
at edu.internet2.middleware.grouper.hibernate.HibernateSession._internal_hibernateSessionCatch(HibernateSession.java:575)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:697)
at edu.internet2.middleware.grouper.hibernate.ByObjectStatic.save(ByObjectStatic.java:468)
at edu.internet2.middleware.grouper.internal.dao.hib3.Hib3MembershipDAO.save(Hib3MembershipDAO.java:2053)
at edu.internet2.middleware.grouper.Membership.internal_addImmediateMembership(Membership.java:2748)
at edu.internet2.middleware.grouper.privs.GrouperNonDbAttrDefAdapter$1.callback(GrouperNonDbAttrDefAdapter.java:243)
at edu.internet2.middleware.grouper.GrouperSession.callbackGrouperSession(GrouperSession.java:974)
at edu.internet2.middleware.grouper.privs.GrouperNonDbAttrDefAdapter.grantPriv(GrouperNonDbAttrDefAdapter.java:228)
at edu.internet2.middleware.grouper.privs.AttributeDefWrapper.grantPrivilege(AttributeDefWrapper.java:147)
at edu.internet2.middleware.grouper.privs.AttributeDefResolverDecorator.grantPrivilege(AttributeDefResolverDecorator.java:144)
at edu.internet2.middleware.grouper.privs.AttributeDefResolverDecorator.grantPrivilege(AttributeDefResolverDecorator.java:144)
at edu.internet2.middleware.grouper.privs.CachingAttrDefResolver.grantPrivilege(CachingAttrDefResolver.java:179)
at edu.internet2.middleware.grouper.privs.AttributeDefResolverDecorator.grantPrivilege(AttributeDefResolverDecorator.java:144)
at edu.internet2.middleware.grouper.privs.ValidatingAttrDefResolver.grantPrivilege(ValidatingAttrDefResolver.java:116)
at edu.internet2.middleware.grouper.Stem._grantDefaultPrivsUponCreate(Stem.java:2841)
at edu.internet2.middleware.grouper.Stem.access$500(Stem.java:167)
at edu.internet2.middleware.grouper.Stem$7.callback(Stem.java:2518)
... 20 more
Caused by: org.hibernate.exception.GenericJDBCException: Could not execute JDBC batch update,
Exception in save: edu.internet2.middleware.grouper.Membership, edu.internet2.middleware.grouper.hibernate.ByObject@2f9922b5
at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:140)
at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:128)
at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:66)
at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:275)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:268)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:184)
at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:321)
at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:51)
at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1216)
at edu.internet2.middleware.grouper.hibernate.ByObject.save(ByObject.java:214)
at edu.internet2.middleware.grouper.hibernate.ByObjectStatic$7.callback(ByObjectStatic.java:481)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:687)
... 35 more
Caused by: java.sql.BatchUpdateException: failed batch
at org.hsqldb.jdbc.jdbcStatement.executeBatch(Unknown Source)
at org.hsqldb.jdbc.jdbcPreparedStatement.executeBatch(Unknown Source)
at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeBatch(NewProxyPreparedStatement.java:1723)
at org.hibernate.jdbc.BatchingBatcher.doExecuteBatch(BatchingBatcher.java:70)
at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:268)
... 43 more
java.lang.RuntimeException: Problem adding loader type/attributes
at edu.internet2.middleware.grouper.misc.GrouperStartup.initLoaderType(GrouperStartup.java:591)
at edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.java:275)
at edu.internet2.middleware.grouper.registry.RegistryInitializeSchema.main(RegistryInitializeSchema.java:188)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at edu.internet2.middleware.grouper.app.gsh.GrouperShell.handleSpecialCase(GrouperShell.java:204)
at edu.internet2.middleware.grouper.app.gsh.GrouperShell.main(GrouperShell.java:144)
at edu.internet2.middleware.grouper.app.gsh.GrouperShellWrapper.main(GrouperShellWrapper.java:31)
Caused by: java.lang.RuntimeException: Cannot create attribute def: , stem name: etc:legacy:attribute, attrDef extension: legacyGroupTypeDef_grouperLoader, uuid: null, , Problem in HibernateSession: HibernateSession (6dd603f5): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Exception in save: edu.internet2.middleware.grouper.Membership, ByObjectStatic, query: ', cacheable: null, cacheRegion: null, entityName: ImmediateMembershipEntry, tx type: null,
Problem in HibernateSession: HibernateSession (cb321c1): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Problem in HibernateSession: HibernateSession (3d980821): new, notReadonly, READ_WRITE_NEW, notActiveTransaction, session (f7a2eab)
at edu.internet2.middleware.grouper.misc.GrouperStartup$3.callback(GrouperStartup.java:578)
at edu.internet2.middleware.grouper.GrouperSession.callbackGrouperSession(GrouperSession.java:974)
at edu.internet2.middleware.grouper.misc.GrouperStartup.initLoaderType(GrouperStartup.java:556)
... 9 more
Caused by: edu.internet2.middleware.grouper.exception.AttributeDefAddException: Cannot create attribute def: , stem name: etc:legacy:attribute, attrDef extension: legacyGroupTypeDef_grouperLoader, uuid: null, , Problem in HibernateSession: HibernateSession (6dd603f5): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Exception in save: edu.internet2.middleware.grouper.Membership, ByObjectStatic, query: ', cacheable: null, cacheRegion: null, entityName: ImmediateMembershipEntry, tx type: null,
Problem in HibernateSession: HibernateSession (cb321c1): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Problem in HibernateSession: HibernateSession (3d980821): new, notReadonly, READ_WRITE_NEW, notActiveTransaction, session (f7a2eab)
at edu.internet2.middleware.grouper.Stem$7.callback(Stem.java:2540)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:687)
at edu.internet2.middleware.grouper.Stem.internal_addChildAttributeDef(Stem.java:2476)
at edu.internet2.middleware.grouper.Stem.addChildAttributeDef(Stem.java:544)
at edu.internet2.middleware.grouper.GroupType$5.callback(GroupType.java:856)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:687)
at edu.internet2.middleware.grouper.GroupType.internal_createType(GroupType.java:819)
at edu.internet2.middleware.grouper.GroupType.createTypeHelper(GroupType.java:233)
at edu.internet2.middleware.grouper.GroupType.createType(GroupType.java:181)
at edu.internet2.middleware.grouper.misc.GrouperStartup$3.callback(GrouperStartup.java:562)
... 11 more
Caused by: edu.internet2.middleware.grouper.internal.dao.GrouperDAOException: Problem in HibernateSession: HibernateSession (6dd603f5): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Exception in save: edu.internet2.middleware.grouper.Membership, ByObjectStatic, query: ', cacheable: null, cacheRegion: null, entityName: ImmediateMembershipEntry, tx type: null
at edu.internet2.middleware.grouper.hibernate.HibernateSession._internal_hibernateSessionCatch(HibernateSession.java:575)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:697)
at edu.internet2.middleware.grouper.hibernate.ByObjectStatic.save(ByObjectStatic.java:468)
at edu.internet2.middleware.grouper.internal.dao.hib3.Hib3MembershipDAO.save(Hib3MembershipDAO.java:2053)
at edu.internet2.middleware.grouper.Membership.internal_addImmediateMembership(Membership.java:2748)
at edu.internet2.middleware.grouper.privs.GrouperNonDbAttrDefAdapter$1.callback(GrouperNonDbAttrDefAdapter.java:243)
at edu.internet2.middleware.grouper.GrouperSession.callbackGrouperSession(GrouperSession.java:974)
at edu.internet2.middleware.grouper.privs.GrouperNonDbAttrDefAdapter.grantPriv(GrouperNonDbAttrDefAdapter.java:228)
at edu.internet2.middleware.grouper.privs.AttributeDefWrapper.grantPrivilege(AttributeDefWrapper.java:147)
at edu.internet2.middleware.grouper.privs.AttributeDefResolverDecorator.grantPrivilege(AttributeDefResolverDecorator.java:144)
at edu.internet2.middleware.grouper.privs.AttributeDefResolverDecorator.grantPrivilege(AttributeDefResolverDecorator.java:144)
at edu.internet2.middleware.grouper.privs.CachingAttrDefResolver.grantPrivilege(CachingAttrDefResolver.java:179)
at edu.internet2.middleware.grouper.privs.AttributeDefResolverDecorator.grantPrivilege(AttributeDefResolverDecorator.java:144)
at edu.internet2.middleware.grouper.privs.ValidatingAttrDefResolver.grantPrivilege(ValidatingAttrDefResolver.java:116)
at edu.internet2.middleware.grouper.Stem._grantDefaultPrivsUponCreate(Stem.java:2841)
at edu.internet2.middleware.grouper.Stem.access$500(Stem.java:167)
at edu.internet2.middleware.grouper.Stem$7.callback(Stem.java:2518)
... 20 more
Caused by: org.hibernate.exception.GenericJDBCException: Could not execute JDBC batch update,
Exception in save: edu.internet2.middleware.grouper.Membership, edu.internet2.middleware.grouper.hibernate.ByObject@2f9922b5
at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:140)
at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:128)
at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:66)
at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:275)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:268)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:184)
at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:321)
at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:51)
at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1216)
at edu.internet2.middleware.grouper.hibernate.ByObject.save(ByObject.java:214)
at edu.internet2.middleware.grouper.hibernate.ByObjectStatic$7.callback(ByObjectStatic.java:481)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:687)
... 35 more
Caused by: java.sql.BatchUpdateException: failed batch
at org.hsqldb.jdbc.jdbcStatement.executeBatch(Unknown Source)
at org.hsqldb.jdbc.jdbcPreparedStatement.executeBatch(Unknown Source)
at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeBatch(NewProxyPreparedStatement.java:1723)
at org.hibernate.jdbc.BatchingBatcher.doExecuteBatch(BatchingBatcher.java:70)
at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:268)
... 43 more
Exception in thread "main" java.lang.RuntimeException: java.lang.reflect.InvocationTargetException
at edu.internet2.middleware.grouper.app.gsh.GrouperShell.handleSpecialCase(GrouperShell.java:214)
at edu.internet2.middleware.grouper.app.gsh.GrouperShell.main(GrouperShell.java:144)
at edu.internet2.middleware.grouper.app.gsh.GrouperShellWrapper.main(GrouperShellWrapper.java:31)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at edu.internet2.middleware.grouper.app.gsh.GrouperShell.handleSpecialCase(GrouperShell.java:204)
... 2 more
Caused by: java.lang.RuntimeException: java.lang.RuntimeException: Problem adding loader type/attributes
at edu.internet2.middleware.grouper.registry.RegistryInitializeSchema.main(RegistryInitializeSchema.java:194)
... 7 more
Caused by: java.lang.RuntimeException: Problem adding loader type/attributes
at edu.internet2.middleware.grouper.misc.GrouperStartup.initLoaderType(GrouperStartup.java:591)
at edu.internet2.middleware.grouper.misc.GrouperStartup.startup(GrouperStartup.java:275)
at edu.internet2.middleware.grouper.registry.RegistryInitializeSchema.main(RegistryInitializeSchema.java:188)
... 7 more
Caused by: java.lang.RuntimeException: Cannot create attribute def: , stem name: etc:legacy:attribute, attrDef extension: legacyGroupTypeDef_grouperLoader, uuid: null, , Problem in HibernateSession: HibernateSession (6dd603f5): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Exception in save: edu.internet2.middleware.grouper.Membership, ByObjectStatic, query: ', cacheable: null, cacheRegion: null, entityName: ImmediateMembershipEntry, tx type: null,
Problem in HibernateSession: HibernateSession (cb321c1): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Problem in HibernateSession: HibernateSession (3d980821): new, notReadonly, READ_WRITE_NEW, notActiveTransaction, session (f7a2eab)
at edu.internet2.middleware.grouper.misc.GrouperStartup$3.callback(GrouperStartup.java:578)
at edu.internet2.middleware.grouper.GrouperSession.callbackGrouperSession(GrouperSession.java:974)
at edu.internet2.middleware.grouper.misc.GrouperStartup.initLoaderType(GrouperStartup.java:556)
... 9 more
Caused by: edu.internet2.middleware.grouper.exception.AttributeDefAddException: Cannot create attribute def: , stem name: etc:legacy:attribute, attrDef extension: legacyGroupTypeDef_grouperLoader, uuid: null, , Problem in HibernateSession: HibernateSession (6dd603f5): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Exception in save: edu.internet2.middleware.grouper.Membership, ByObjectStatic, query: ', cacheable: null, cacheRegion: null, entityName: ImmediateMembershipEntry, tx type: null,
Problem in HibernateSession: HibernateSession (cb321c1): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Problem in HibernateSession: HibernateSession (3d980821): new, notReadonly, READ_WRITE_NEW, notActiveTransaction, session (f7a2eab)
at edu.internet2.middleware.grouper.Stem$7.callback(Stem.java:2540)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:687)
at edu.internet2.middleware.grouper.Stem.internal_addChildAttributeDef(Stem.java:2476)
at edu.internet2.middleware.grouper.Stem.addChildAttributeDef(Stem.java:544)
at edu.internet2.middleware.grouper.GroupType$5.callback(GroupType.java:856)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:687)
at edu.internet2.middleware.grouper.GroupType.internal_createType(GroupType.java:819)
at edu.internet2.middleware.grouper.GroupType.createTypeHelper(GroupType.java:233)
at edu.internet2.middleware.grouper.GroupType.createType(GroupType.java:181)
at edu.internet2.middleware.grouper.misc.GrouperStartup$3.callback(GrouperStartup.java:562)
... 11 more
Caused by: edu.internet2.middleware.grouper.internal.dao.GrouperDAOException: Problem in HibernateSession: HibernateSession (6dd603f5): notNew, notReadonly, READ_WRITE_NEW, activeTransaction, session (f7a2eab),
Exception in save: edu.internet2.middleware.grouper.Membership, ByObjectStatic, query: ', cacheable: null, cacheRegion: null, entityName: ImmediateMembershipEntry, tx type: null
at edu.internet2.middleware.grouper.hibernate.HibernateSession._internal_hibernateSessionCatch(HibernateSession.java:575)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:697)
at edu.internet2.middleware.grouper.hibernate.ByObjectStatic.save(ByObjectStatic.java:468)
at edu.internet2.middleware.grouper.internal.dao.hib3.Hib3MembershipDAO.save(Hib3MembershipDAO.java:2053)
at edu.internet2.middleware.grouper.Membership.internal_addImmediateMembership(Membership.java:2748)
at edu.internet2.middleware.grouper.privs.GrouperNonDbAttrDefAdapter$1.callback(GrouperNonDbAttrDefAdapter.java:243)
at edu.internet2.middleware.grouper.GrouperSession.callbackGrouperSession(GrouperSession.java:974)
at edu.internet2.middleware.grouper.privs.GrouperNonDbAttrDefAdapter.grantPriv(GrouperNonDbAttrDefAdapter.java:228)
at edu.internet2.middleware.grouper.privs.AttributeDefWrapper.grantPrivilege(AttributeDefWrapper.java:147)
at edu.internet2.middleware.grouper.privs.AttributeDefResolverDecorator.grantPrivilege(AttributeDefResolverDecorator.java:144)
at edu.internet2.middleware.grouper.privs.AttributeDefResolverDecorator.grantPrivilege(AttributeDefResolverDecorator.java:144)
at edu.internet2.middleware.grouper.privs.CachingAttrDefResolver.grantPrivilege(CachingAttrDefResolver.java:179)
at edu.internet2.middleware.grouper.privs.AttributeDefResolverDecorator.grantPrivilege(AttributeDefResolverDecorator.java:144)
at edu.internet2.middleware.grouper.privs.ValidatingAttrDefResolver.grantPrivilege(ValidatingAttrDefResolver.java:116)
at edu.internet2.middleware.grouper.Stem._grantDefaultPrivsUponCreate(Stem.java:2841)
at edu.internet2.middleware.grouper.Stem.access$500(Stem.java:167)
at edu.internet2.middleware.grouper.Stem$7.callback(Stem.java:2518)
... 20 more
Caused by: org.hibernate.exception.GenericJDBCException: Could not execute JDBC batch update,
Exception in save: edu.internet2.middleware.grouper.Membership, edu.internet2.middleware.grouper.hibernate.ByObject@2f9922b5
at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:140)
at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:128)
at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:66)
at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:275)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:268)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:184)
at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:321)
at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:51)
at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1216)
at edu.internet2.middleware.grouper.hibernate.ByObject.save(ByObject.java:214)
at edu.internet2.middleware.grouper.hibernate.ByObjectStatic$7.callback(ByObjectStatic.java:481)
at edu.internet2.middleware.grouper.hibernate.HibernateSession.callbackHibernateSession(HibernateSession.java:687)
... 35 more
Caused by: java.sql.BatchUpdateException: failed batch
at org.hsqldb.jdbc.jdbcStatement.executeBatch(Unknown Source)
at org.hsqldb.jdbc.jdbcPreparedStatement.executeBatch(Unknown Source)
at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeBatch(NewProxyPreparedStatement.java:1723)
at org.hibernate.jdbc.BatchingBatcher.doExecuteBatch(BatchingBatcher.java:70)
at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:268)
... 43 more

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Assignee:: Shilen Patel (duke.edu)

Reporter:: Shilen Patel (duke.edu)

Votes:: 0 Vote for this issue

Watchers:: 1 Start watching this issue

Dates

Created:: 16/Sep/15 8:23 PM

Updated:: 16/Sep/15 8:32 PM

Resolved:: 16/Sep/15 8:32 PM