Minor Description
Startup file change permissions are acting in /opt/grouper, and includes /opt/grouper/slashRoot which it should filter out.
$ touch testfile
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$ ls -al testfile
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-rw-rw-r-- 1 credman credman 0 Dec 8 19:39 testfile
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$ docker run --rm -v $PWD/testfile:/opt/grouper/slashRoot/opt/grouper/testfile i2incommon/grouper:2.6.18 gsh
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^C
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$ ls -al testfile
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-rwxrwxr-x 1 credman credman 0 Dec 8 19:39 testfile*
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One of the benefits of /opt/grouper/slashRoot is that it doesn't get touched at runtime, so doesn't alter your git repository, for example.